PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131553001
Common NameGSBRNA2T00131553001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 246aa    MW: 27628.4 Da    PI: 9.2944
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131553001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof104.65.6e-332177561
               zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                          + cprC s+ntkfC+ynnys+sqPry C++Crr+Wt+GG lrn+P+Gg +rk k++
  GSBRNA2T00131553001 21 PQVCPRCSSDNTKFCFYNNYSVSQPRYNCRSCRRFWTHGGVLRNIPIGGRARKVKHT 77
                         678**************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-211676IPR003851Zinc finger, Dof-type
PfamPF027015.5E-302276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.9932276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDNSNVLVRG NRQVNEEKPP PQVCPRCSSD NTKFCFYNNY SVSQPRYNCR SCRRFWTHGG  60
VLRNIPIGGR ARKVKHTRID QPSVSQVVSV VEQVNNHQSF SHAQETNEFL GTFGGSSSSV  120
AAVGNHFSYS TETHSVMVPP FRSIPPMARF DGSFHQGYYG DGFNDLVGNP LMNQSFGGNV  180
GNYNSYFVNQ EDPNKRNQSF NNSMNMNHSA STSGSREYPG IDYMINNNNK KYVFRSSYHL  240
EKHGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.271580.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131553001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647344.11e-180PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA94e-72DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A078CQR30.0A0A078CQR3_BRANA; BnaA01g10890D protein
STRINGBra013490.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.18e-59Dof-type zinc finger domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]